If you use QuickBooks Payments to process credit cards and online invoice payments, QuickBooks automatically records those deposits for you. For any other type of payment, follow the instructions listed here.
Important: If you want to deposit money from a customer towards an invoice, do not use the Deposit page. Instead, click Create (+), and then select Receive payment. Receive payment "links" payments to invoices, so you can tell which invoices have been paid (and which are unpaid).
After you've recorded payments that are linked with invoices, return to the Deposit page and choose the customer payments from the Payments table. You can also print a deposit slip that contains multiple cheques to take with you.
Tip: If you have multiple deposits to record, you may find it faster to enter them from the account history instead.
You can also download transactions directly from your bank into your QuickBooks account. How do I start using Online Banking?
Tip: If you identify each payment or deposit item with its payment method (such as cash or cheque), your deposit will match the way your bank formats its bank statements. This makes reconciling easier later.